Package: GenomeScaleEmbeddings
Title: Exploring Genome-Scale Embeddings in 'Parquet' Files
Version: 0.0.0.9000
Authors@R: c(
    person(given = "Sounkou Mahamane", family = "Toure", email = "sounkoutoure@gmail.com", role = c("aut", "cre"))
  )
Description: Provides tools to explore genome-scale variant embeddings
        stored in 'Parquet' files, including data access, matrix
        conversion, principal component analysis, summaries, and
        visualization. The datasets accompany Niu et al. (2025),
        "Incorporating Large Language Model (LLM) Embeddings for
        Variation Across the Human Genome"
        <https://arxiv.org/abs/2509.20702>.
Depends: R (>= 4.4.0)
Imports: bigmemory, bigPCAcpp, DBI, dplyr, duckdb, ggplot2, houba,
        jsonlite
License: LGPL (>= 3)
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Remotes: HervePerdry/houba, fbertran/bigPCAcpp
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: xz-utils
Repository: https://sounkou-bioinfo.r-universe.dev
Date/Publication: 2026-07-21 20:11:18 UTC
RemoteUrl: https://github.com/sounkou-bioinfo/GenomeScaleEmbeddings
RemoteRef: HEAD
RemoteSha: c5b01269e2ad03da66d450bda8e3aa077e1912fa
NeedsCompilation: no
Packaged: 2026-10-19 08:51:51 UTC; root
Author: Sounkou Mahamane Toure [aut, cre]
Maintainer: Sounkou Mahamane Toure <sounkoutoure@gmail.com>