Package: Rminibwa 0.0.0.9000
Rminibwa: Native R Bindings and SIMD Dispatch for 'minibwa'
Provides native R bindings to the 'minibwa' genomic read aligner with raw-vector query input, external-pointer alignment batches, ALTREP column views, and an installed C API for downstream packages. The package builds staged Single Instruction Multiple Data ('SIMD') KSW backends and selects portable scalar, SSE4, or AVX2 code at runtime without global instruction-set compiler flags.
Authors:
Rminibwa_0.0.0.9000.tar.gz
Rminibwa_0.0.0.9000.zip(r-4.7)Rminibwa_0.0.0.9000.zip(r-4.6)Rminibwa_0.0.0.9000.zip(r-4.5)
Rminibwa_0.0.0.9000.tgz(r-4.6-x86_64)Rminibwa_0.0.0.9000.tgz(r-4.6-arm64)Rminibwa_0.0.0.9000.tgz(r-4.5-x86_64)Rminibwa_0.0.0.9000.tgz(r-4.5-arm64)
Rminibwa_0.0.0.9000.tar.gz(r-4.7-arm64)Rminibwa_0.0.0.9000.tar.gz(r-4.7-x86_64)Rminibwa_0.0.0.9000.tar.gz(r-4.6-arm64)Rminibwa_0.0.0.9000.tar.gz(r-4.6-x86_64)
Rminibwa_0.0.0.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
Rminibwa/json (API)
NEWS
| # Install 'Rminibwa' in R: |
| install.packages('Rminibwa', repos = c('https://sounkou-bioinfo.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/sounkou-bioinfo/rminibwa/issues
Pkgdown/docs site:https://sounkou-bioinfo.github.io
alignmentaltrepbioinformaticsc-apigenomicsminibwasimdzlib
Last updated from:2e418fb293. Checks:10 OK, 3 WARNING. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 143 | ||
| linux-devel-x86_64 | OK | 197 | ||
| source / vignettes | OK | 231 | ||
| linux-release-arm64 | OK | 147 | ||
| linux-release-x86_64 | OK | 133 | ||
| macos-release-arm64 | OK | 111 | ||
| macos-release-x86_64 | OK | 185 | ||
| macos-oldrel-arm64 | OK | 123 | ||
| macos-oldrel-x86_64 | OK | 247 | ||
| windows-devel | WARNING | 166 | ||
| windows-release | WARNING | 299 | ||
| windows-oldrel | WARNING | 137 | ||
| wasm-release | OK | 136 |
Exports:mb_align_cigar_wordsmb_align_colmb_align_nmb_index_buildmb_index_contigsmb_index_loadmb_mapmb_optsminibwa_availableminibwa_climinibwa_indexminibwa_mapminibwa_pathminibwa_upstream_infominibwa_versionsimd_backendsimd_infosimd_set_backend
Dependencies:RsimdDispatch
Downstream C API
Rendered fromdownstream-c-api.Rmdusingknitr::rmarkdownon Jun 23 2026.Last update: 2026-06-23
Started: 2026-06-23
Getting Started
Rendered fromgetting-started.Rmdusingknitr::rmarkdownon Jun 23 2026.Last update: 2026-06-23
Started: 2026-06-18
SIMDe Dispatch Design
Rendered fromsimde-dispatch.Rmdusingknitr::rmarkdownon Jun 23 2026.Last update: 2026-06-23
Started: 2026-06-18
Vendoring minibwa
Rendered fromvendoring-minibwa.Rmdusingknitr::rmarkdownon Jun 23 2026.Last update: 2026-06-23
Started: 2026-06-18
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Inspect native minibwa alignment batches | mb_align_cigar_words mb_align_col mb_align_n |
| Build a minibwa index with the native library | mb_index_build |
| Return minibwa index contigs | mb_index_contigs |
| Load a native minibwa index | mb_index_load |
| Map raw sequence bytes with native minibwa | mb_map |
| Native minibwa options | mb_opts |
| Test whether the minibwa CLI is available | minibwa_available |
| Run the minibwa CLI | minibwa_cli |
| Build a minibwa index through the CLI | minibwa_index |
| Map reads through the minibwa CLI | minibwa_map |
| Locate the packaged minibwa executable | minibwa_path |
| Report the pinned upstream minibwa source | minibwa_upstream_info |
| Report the minibwa CLI version | minibwa_version |
| Report the selected SIMD backend | simd_backend |
| Report SIMD dispatch diagnostics | simd_info |
| Select the runtime SIMD backend | simd_set_backend |
