Changes in version 0.0.0.9000                      

  - Bootstrap Rminibwa as a GPL (>= 2) R package wrapping pinned
    upstream lh3/minibwa C sources.
  - Add native bindings for index build/load, raw-vector query mapping,
    native external-pointer alignment batches, ALTREP column views, and
    packed CIGAR accessors.
  - Install inst/include/Rminibwa.h and register C-callable accessors so
    downstream packages can consume alignment batches directly from C.
  - Add staged KSW SIMD dispatch following the RsimdDispatch pattern:
    portable scalar/SIMDe fallback, SSE4, and AVX2 backends are compiled
    as separate objects and selected at runtime without global ISA
    compiler flags.
  - Add AVX2 dual-gap extd2 support from the minibwa binding work and
    keep it as an optional runtime-dispatched backend.
  - Vendor minibwa at commit f0fd108456d459e5da3755f29c8700dc7f6fe0df
    with a patch queue and provenance metadata.
  - Add Rtinycc inline downstream-C examples in the README, vignette,
    and tests.
  - Build and install a package-provided minibwa executable from
    vendored sources; CLI wrappers now use it by default.
  - Add developer-only benchmarks comparing internal staged backends and
    optional external Python/Rust bindings from an explicit local
    checkout.
  - Add make asm / tools/check-assembly.R to audit generated SIMD
    instruction families in staged objects and shared libraries.
  - Add pkgdown configuration and GitHub Actions workflows for standard
    R CMD check, Fedora/R-devel CRAN-style check, and GitHub Pages
    deployment.