Functions | Coordinates | Inputs | Match regions | Search strategies
Package: Rsassy 0.2.1-0.1.0.9000
Rsassy: 'R' Bindings to the 'sassy' Approximate String Matcher
Fast approximate string matching for short patterns in longer texts using the 'sassy' Rust crate. 'sassy' implements SIMD-accelerated fuzzy search over ASCII, DNA, and IUPAC alphabets, with support for reverse-complement search, overhang alignments, CIGAR strings, and batched searches. See Beeloo and Groot Koerkamp (2025) <doi:10.1101/2025.07.22.666207> and Beeloo and Groot Koerkamp (2026) <doi:10.64898/2026.03.10.710811>.
Authors:
Rsassy_0.2.1-0.1.0.9000.tar.gz
Rsassy_0.2.1-0.1.0.9000.zip(r-4.7)Rsassy_0.2.1-0.1.0.9000.zip(r-4.6)Rsassy_0.2.1-0.1.0.9000.zip(r-4.5)
Rsassy_0.2.1-0.1.0.9000.tgz(r-4.6-x86_64)Rsassy_0.2.1-0.1.0.9000.tgz(r-4.6-arm64)Rsassy_0.2.1-0.1.0.9000.tgz(r-4.5-x86_64)Rsassy_0.2.1-0.1.0.9000.tgz(r-4.5-arm64)
Rsassy_0.2.1-0.1.0.9000.tar.gz(r-4.7-arm64)Rsassy_0.2.1-0.1.0.9000.tar.gz(r-4.7-x86_64)Rsassy_0.2.1-0.1.0.9000.tar.gz(r-4.6-arm64)Rsassy_0.2.1-0.1.0.9000.tar.gz(r-4.6-x86_64)
Rsassy_0.2.1-0.1.0.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
Rsassy/json (API)
| # Install 'Rsassy' in R: |
| install.packages('Rsassy', repos = c('https://sounkou-bioinfo.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/sounkou-bioinfo/rsassy/issues
Pkgdown/docs site:https://sounkou-bioinfo.github.io
bioinformaticsrustsassysimdstring-matchingcargo
Last updated from:01a9181095. Checks:13 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 203 | ||
| linux-devel-x86_64 | OK | 222 | ||
| source / vignettes | OK | 358 | ||
| linux-release-arm64 | OK | 194 | ||
| linux-release-x86_64 | OK | 218 | ||
| macos-release-arm64 | OK | 145 | ||
| macos-release-x86_64 | OK | 372 | ||
| macos-oldrel-arm64 | OK | 161 | ||
| macos-oldrel-x86_64 | OK | 312 | ||
| windows-devel | OK | 300 | ||
| windows-release | OK | 287 | ||
| windows-oldrel | OK | 271 | ||
| wasm-release | OK | 140 |
Exports:sassy_as_samsassy_crisprsassy_fastx_itersassy_fastx_nextsassy_featuressassy_searchsassy_searchersassy_searcher_searchsassy_set_backend
Dependencies:
API and Coordinates
Last update: 2026-05-31
Started: 2026-05-30
Chunked FASTA/FASTQ Iteration
Searching a batch | Qualities | Gzip input | Performance model | Validation story
Last update: 2026-05-31
Started: 2026-05-31
Development and Vendoring
Vendoring | Development commands | R build hooks
Last update: 2026-05-31
Started: 2026-05-30
Getting Started with Rsassy
Install | Search | Reuse a searcher | Multiple patterns or texts | FASTA/FASTQ batches
Last update: 2026-05-31
Started: 2026-05-30
Backend Selection
Auto selection | Explicit selection | Why separate backend libraries?
Last update: 2026-05-30
Started: 2026-05-30
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Print Rsassy feature information | print.sassy_features |
| Print sassy match data frames | print.sassy_matches |
| Format matches in SAM-compatible text direction | sassy_as_sam |
| Search CRISPR guide targets | sassy_crispr |
| Create a chunked FASTA/FASTQ iterator | sassy_fastx_iter |
| Get the next FASTA/FASTQ batch | sassy_fastx_next |
| Report Rsassy build and CPU feature information | sassy_features |
| Search approximate matches with 'sassy' | sassy_search |
| Create a reusable 'sassy' searcher | sassy_searcher |
| Search with a reusable 'sassy' searcher | sassy_searcher_search |
| Select the Rsassy native backend | sassy_set_backend |
